Publications

Phylogenetics

Lees, J. A., Kendall, M., Parkhill, J., Colijn, C., Bentley, S. D. and Harris, S. R. (2018) Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 2; referees: 3 approved], Wellcome Open Research, 3:33. [pdf]

Kendall, M., Ayabina, D., Xu, Y., Stimson, J. and Colijn, C. (2018) Estimating transmission from genetic and epidemiological data: a metric to compare transmission trees, Statistical Science, 33(1):70-85 [pdf]

Kendall, M., Eldholm, V. and Colijn, C. (2018) Comparing phylogenetic trees according to tip label categories, bioRxiv preprint [pdf]

Grandjean, L. et al (2017) Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru, PLoS ONE, 12(12):e0189838 [pdf]

Ratmann, O. et al (2017) HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences, AIDS Research and Human Retroviruses, 33(11):1083-1098 [pdf]

Jombart, T., Kendall, M., Almagro-Garcia, J. and Colijn, C. (2017) treespace: statistical exploration of landscapes of phylogenetic trees, Molecular Ecology Resources, 17(6):1385-1392 [pdf]

Ratmann, O. et al (2017) Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison, Molecular Biology and Evolution, 34(1):185-203 [pdf]

Kendall, M. and Colijn, C. (2016) Mapping phylogenetic trees to reveal distinct patterns of evolution, Molecular Biology and Evolution, 33(10):2735-2743 [pdf]

Key predistribution

Kendall, M. and Martin, K. M. (2016) Graph-theoretic design and analysis of key predistribution schemes, Designs, Codes and Cryptography, 81(1): 11-34

Kendall, M., Martin, K. M., Ng, S.-L., Paterson, M. B., & Stinson, D. R. (2014) Broadcast-enhanced key predistribution schemes, ACM Transactions on Sensor Networks, 11(1): 1–33

Kendall, M. (2013) Combinatorial Aspects of Key Predistribution for Resource-Constrained Networks, Doctoral Thesis, Royal Holloway, University of London. [pdf]

Kendall, E., Kendall, M. & Kendall, W.S. (2012) A generalised formula for calculating the resilience of random key predistribution schemes, eprint archive [pdf]

Kendall, M. and Martin, K. M. (2012) On the role of expander graphs in key predistribution schemes for wireless sensor networks, In Research in Cryptology, volume 7242 of Lecture Notes in Computer Science, 62-82