Create a labelled genealogy from an epidemiological record
getLabGenealogy(epirecord, epsilon = 0.001234)Arguments
- epirecord
an epidemiological record, as output from the function
makeEpiRecord. It must be a matrix of at least two rows and with five columns named "Infectee", "Infector", "InfnTime", "RecTime", "DoneFlag".- epsilon
an optional small number to be used for branch lengths which would otherwise be zero.
Value
An object of class phylo representing the transmission tree from infectors to infectees.
See also
Examples
## Generate an epidemiological record:
myepirecord <- makeEpiRecord(c(1,2,3,4))
## make the corresponding genealogy from this record:
mygenealogy <- getLabGenealogy(myepirecord)
plot(mygenealogy)
